Remote Sensing Of Rice-Based Irrigated Agriculture: A Review

The ‘Green Revolution’ in rice farming of the late 1960’s denotes the beginning of the extensive breeding programs that have led to the many improved rice varieties that are now planted on more than 60% of the world’s riceland (Khush, 1987). This revolution led to increases in yield potential of 2 to 3 times that of traditional varieties (Khush, 1987). Similar trends have also been seen in the Irrigation Areas and Districts of southern New South Wales (NSW) as the local breeding program has produced many improved varieties of rice adapted to local growing conditions since the 1960’s (Brennan et al., 1994). Increases in area of rice planted, rice quality, and paddy yield resulted (Brennan et al., 1994). Increased rice area, however, has led to the development of high water tables and risk of large tracts of land becoming salt-affected in southern NSW (Humphreys et al., 1994b). These concerns have led to various environmental regulations on rice in the region, culminating in 1994 when restrictions on rice area, soil suitability, and water consumption were fully enacted (Humphreys et al., 1994b). Strict environmental restrictions in combination with large areas of land make the management of this region a difficult task. Land managers require, among other things, a way of regulating water use, assessing or predicting crop area and productivity, and making management decisions in support of environmentally and economically sustainable agriculture. In the search for more time and cost effective methods for attaining these goals, while monitoring complex management situations, many have turned to remote sensing and Geographic Information System (GIS) technologies for assistance. The spectral information and spatial density of remote sensing data lends itself well to the measurement of large areas. Since the launch of LANDSAT-1 in 1972, this technology has been used extensively in agricultural systems for crop identification and area estimation, crop yield estimation and prediction, and crop damage assessment. The incorporation of remote sensing and GIS can also help integrate management practices and develop effective management plans. However, in order to take advantage of these tools, users must have an understanding of both what remote sensing is and what sensors are now available, and how the technology is being used in applied agricultural research. Accordingly, a description of both follows: first a description of the technology, and then how it is currently being applied. The applications of remote sensing relevant to this discussion can be separated into crop type identification; crop area measurement; crop yield; crop damage; water use/ moisture availability (ma) mapping; and water use efficiency monitoring/mapping. This report focuses on satellite remote sensing for broad-scale rice-based irrigation agricultural applications. It also discusses related regional GIS analyses that may or may not include remote sensing data, and briefly addresses other sources of finer-scale remote sensing and geospatial data as they relate to agriculture. Since a complete review of the remote sensing research was not provided in the rice literature alone, some generic agricultural issues have been learned from applications not specifically dealing with rice. Remote sensing specialists may wish to skip to section 2

Assessing and Improving Positional Accuracy and its Effects on Areal Estimation at Coleambally Irrigation Area

If management decisions are made with geospatial data that have not been assessed for positional accuracy, then debate about both methodologies of measurement and management decisions can occur. This debate, in part, can be avoided by assessing the positional accuracy of geospatial data, leading to increased confidence (decreased uncertainty) in both the data and the decisions made from the data. In this study, we assessed the positional accuracy of two Geographic Information System (GIS) baseline datasets at the Coleambally Irrigation Area (CIA); high-resolution digital aerial photography acquired in January 2000, and the Digital Topographic Data Base (DTDB) roads data. We also assessed areal error of paddock measurements from an improved accuracy version of the high-resolution digital aerial photography. Positional accuracies were assessed by comparing well-defined features from both baseline datasets (original aerial photography and DTDB roads) to high-level accuracy Differential Global Positioning System (DGPS) data for the same features. This assessment showed that neither baseline dataset met the National Mapping Council of Australia’s standards of map accuracy. Consequently, we processed the original digital photography to create an improved dataset, which was over 2.5 times more accurate than the original photography, and over 4 times more accurate than the DTDB data. The improved dataset also met the map accuracy standard for Australia. We also assessed areal error by comparing paddock boundaries delineated from the improved dataset to those delineated from a DGPS associated with paddock soil surveys. The 90% confidence interval measured from the improved data for any individual paddock is approximately at the ± 5% target error set by Coleambally Irrigation Limited (CIL). The 95% confidence interval is roughly ± 6%. Overall areal error of multiple paddocks is much lower than the individual case with the 95% confidence interval for 2 paddocks being from about ± 4% error reducing to less than ± 2% for 8 or more paddocks. Knowledge of both positional and areal accuracies of the improved high-resolution digital aerial photography provides a means to more effectively manage environmental compliance of rice farmers at CIA and gives the CIL justification for making management decisions from this spatial data

Estimation and Validation of Land Surface Broadband Albedos and Leaf Area Index From EO-1 ALI Data

The Advanced Land Imager (ALI) is a multispectral sensor onboard the National Aeronautics and Space Administration Earth Observing 1 (EO-1) satellite. It has similar spatial resolution to Landsat-7 Enhanced Thematic Mapper Plus (ETM+), with three additional spectral bands. We developed new algorithms for estimating both land surface broadband albedo and leaf area index (LAI) from ALI data. A recently developed atmospheric correction algorithm for ETM+ imagery was extended to retrieve surface spectral reflectance from ALI top-of-atmosphere observations. A feature common to these algorithms is the use of new multispectral information from ALI. The additional blue band of ALI is very useful in our atmospheric correction algorithm, and two additional ALI near-infrared bands are valuable for estimating both broadband albedo and LAI. Ground measurements at Beltsville, MD, and Coleambally, Australia, were used to validate the products generated by these algorithms.This work was supported in part by the National Aeronautics and Space Administration under Grant NCC5462 and by funding provided by the Australian Federal Government to the Commonwealth Scientific and Industrial Research Organization and the Cooperative Research Centre for Sustainable Rice Production, Project 1105

Bridge to the future: Important lessons from 20 years of ecosystem observations made by the OzFlux network

In 2020, the Australian and New Zealand flux research and monitoring network, OzFlux, celebrated its 20th anniversary by reflecting on the lessons learned through two decades of ecosystem studies on global change biology. OzFlux is a network not only for ecosystem researchers, but also for those ‘next users’ of the knowledge, information and data that such networks provide. Here, we focus on eight lessons across topics of climate change and variability, disturbance and resilience, drought and heat stress and synergies with remote sensing and modelling. In distilling the key lessons learned, we also identify where further research is needed to fill knowledge gaps and improve the utility and relevance of the outputs from OzFlux. Extreme climate variability across Australia and New Zealand (droughts and flooding rains) provides a natural laboratory for a global understanding of ecosystems in this time of accelerating climate change. As evidence of worsening global fire risk emerges, the natural ability of these ecosystems to recover from disturbances, such as fire and cyclones, provides lessons on adaptation and resilience to disturbance. Drought and heatwaves are common occurrences across large parts of the region and can tip an ecosystem's carbon budget from a net CO2 sink to a net CO2 source. Despite such responses to stress, ecosystems at OzFlux sites show their resilience to climate variability by rapidly pivoting back to a strong carbon sink upon the return of favourable conditions. Located in under-represented areas, OzFlux data have the potential for reducing uncertainties in global remote sensing products, and these data provide several opportunities to develop new theories and improve our ecosystem models. The accumulated impacts of these lessons over the last 20 years highlights the value of long-term flux observations for natural and managed systems. A future vision for OzFlux includes ongoing and newly developed synergies with ecophysiologists, ecologists, geologists, remote sensors and modellers.</p

Bridge to the future: Important lessons from 20 years of ecosystem observations made by the OzFlux network

In 2020, the Australian and New Zealand flux research and monitoring network, OzFlux, celebrated its 20th anniversary by reflecting on the lessons learned through two decades of ecosystem studies on global change biology. OzFlux is a network not only for ecosystem researchers, but also for those ‘next users’ of the knowledge, information and data that such networks provide. Here, we focus on eight lessons across topics of climate change and variability, disturbance and resilience, drought and heat stress and synergies with remote sensing and modelling. In distilling the key lessons learned, we also identify where further research is needed to fill knowledge gaps and improve the utility and relevance of the outputs from OzFlux. Extreme climate variability across Australia and New Zealand (droughts and flooding rains) provides a natural laboratory for a global understanding of ecosystems in this time of accelerating climate change. As evidence of worsening global fire risk emerges, the natural ability of these ecosystems to recover from disturbances, such as fire and cyclones, provides lessons on adaptation and resilience to disturbance. Drought and heatwaves are common occurrences across large parts of the region and can tip an ecosystem\u27s carbon budget from a net CO2 sink to a net CO2 source. Despite such responses to stress, ecosystems at OzFlux sites show their resilience to climate variability by rapidly pivoting back to a strong carbon sink upon the return of favourable conditions. Located in under-represented areas, OzFlux data have the potential for reducing uncertainties in global remote sensing products, and these data provide several opportunities to develop new theories and improve our ecosystem models. The accumulated impacts of these lessons over the last 20 years highlights the value of long-term flux observations for natural and managed systems. A future vision for OzFlux includes ongoing and newly developed synergies with ecophysiologists, ecologists, geologists, remote sensors and modellers

The Magnitude of Global Marine Species Diversity

Background: The question of how many marine species exist is important because it provides a metric for how much we do and do not know about life in the oceans. We have compiled the first register of the marine species of the world and used this baseline to estimate how many more species, partitioned among all major eukaryotic groups, may be discovered. Results: There are ∼226,000 eukaryotic marine species described. More species were described in the past decade (∼20,000) than in any previous one. The number of authors describing new species has been increasing at a faster rate than the number of new species described in the past six decades. We report that there are ∼170,000 synonyms, that 58,000–72,000 species are collected but not yet described, and that 482,000–741,000 more species have yet to be sampled. Molecular methods may add tens of thousands of cryptic species. Thus, there may be 0.7–1.0 million marine species. Past rates of description of new species indicate there may be 0.5 ± 0.2 million marine species. On average 37% (median 31%) of species in over 100 recent field studies around the world might be new to science. Conclusions: Currently, between one-third and two-thirds of marine species may be undescribed, and previous estimates of there being well over one million marine species appear highly unlikely. More species than ever before are being described annually by an increasing number of authors. If the current trend continues, most species will be discovered this century

Minimal information for studies of extracellular vesicles 2018 (MISEV2018):a position statement of the International Society for Extracellular Vesicles and update of the MISEV2014 guidelines

The last decade has seen a sharp increase in the number of scientific publications describing physiological and pathological functions of extracellular vesicles (EVs), a collective term covering various subtypes of cell-released, membranous structures, called exosomes, microvesicles, microparticles, ectosomes, oncosomes, apoptotic bodies, and many other names. However, specific issues arise when working with these entities, whose size and amount often make them difficult to obtain as relatively pure preparations, and to characterize properly. The International Society for Extracellular Vesicles (ISEV) proposed Minimal Information for Studies of Extracellular Vesicles (“MISEV”) guidelines for the field in 2014. We now update these “MISEV2014” guidelines based on evolution of the collective knowledge in the last four years. An important point to consider is that ascribing a specific function to EVs in general, or to subtypes of EVs, requires reporting of specific information beyond mere description of function in a crude, potentially contaminated, and heterogeneous preparation. For example, claims that exosomes are endowed with exquisite and specific activities remain difficult to support experimentally, given our still limited knowledge of their specific molecular machineries of biogenesis and release, as compared with other biophysically similar EVs. The MISEV2018 guidelines include tables and outlines of suggested protocols and steps to follow to document specific EV-associated functional activities. Finally, a checklist is provided with summaries of key points

Minimal information for studies of extracellular vesicles (MISEV2023): From basic to advanced approaches

Extracellular vesicles (EVs), through their complex cargo, can reflect the state of their cell of origin and change the functions and phenotypes of other cells. These features indicate strong biomarker and therapeutic potential and have generated broad interest, as evidenced by the steady year-on-year increase in the numbers of scientific publications about EVs. Important advances have been made in EV metrology and in understanding and applying EV biology. However, hurdles remain to realising the potential of EVs in domains ranging from basic biology to clinical applications due to challenges in EV nomenclature, separation from non-vesicular extracellular particles, characterisation and functional studies. To address the challenges and opportunities in this rapidly evolving field, the International Society for Extracellular Vesicles (ISEV) updates its 'Minimal Information for Studies of Extracellular Vesicles', which was first published in 2014 and then in 2018 as MISEV2014 and MISEV2018, respectively. The goal of the current document, MISEV2023, is to provide researchers with an updated snapshot of available approaches and their advantages and limitations for production, separation and characterisation of EVs from multiple sources, including cell culture, body fluids and solid tissues. In addition to presenting the latest state of the art in basic principles of EV research, this document also covers advanced techniques and approaches that are currently expanding the boundaries of the field. MISEV2023 also includes new sections on EV release and uptake and a brief discussion of in vivo approaches to study EVs. Compiling feedback from ISEV expert task forces and more than 1000 researchers, this document conveys the current state of EV research to facilitate robust scientific discoveries and move the field forward even more rapidly

Calcite-accumulating large sulfur bacteria of the genus Achromatium in Sippewissett Salt Marsh

Large sulfur bacteria of the genus Achromatium are exceptional among Bacteria and Archaea as they can accumulate high amounts of internal calcite. Although known for more than 100 years, they remain uncultured, and only freshwater populations have been studied so far. Here we investigate a marine population of calcite-accumulating bacteria that is primarily found at the sediment surface of tide pools in a salt marsh, where high sulfide concentrations meet oversaturated oxygen concentrations during the day. Dynamic sulfur cycling by phototrophic sulfide-oxidizing and heterotrophic sulfate-reducing bacteria co-occurring in these sediments creates a highly sulfidic environment that we propose induces behavioral differences in the Achromatium population compared with reported migration patterns in a low-sulfide environment. Fluctuating intracellular calcium/sulfur ratios at different depths and times of day indicate a biochemical reaction of the salt marsh Achromatium to diurnal changes in sedimentary redox conditions. We correlate this calcite dynamic with new evidence regarding its formation/mobilization and suggest general implications as well as a possible biological function of calcite accumulation in large bacteria in the sediment environment that is governed by gradients. Finally, we propose a new taxonomic classification of the salt marsh Achromatium based on their adaptation to a significantly different habitat than their freshwater relatives, as indicated by their differential behavior as well as phylogenetic distance on 16S ribosomal RNA gene level. In future studies, whole-genome characterization and additional ecophysiological factors could further support the distinctive position of salt marsh Achromatium